Course Director: Umit
Catalyurek, PhD, Department
of Biomedical Informatics
Office: 3172B Graves Hall
Class Hours: Tue & Thu 9:00–10:18am Location:
3167 Graves Hall
| # | Date | Lecturer | Topic |
|
1 |
January 3 |
Umit Catalyurek |
Introduction |
|
2 |
January 5 |
Ilya Ioshikes |
Sequence Analysis |
|
3 |
January 10 |
Ilya Ioshikes |
Bioinformatics approaches for studying of gene regulation |
|
4 |
January 12 |
Daniel Janies |
Sequence Databases |
|
5 |
January 17 |
Daniel Janies |
Phylogenetics: Basic theory, optimization and parallelization |
|
6 |
January 19 |
Kun Huang |
Image Analysis, Visualization, Classification |
|
7 |
January 24 |
Kun Huang |
Image Analysis on Microscopy |
|
8 |
January 26 |
Ashish Sharma |
Large scale microscopy imaging - Placenta Project |
|
9 |
January 31 |
Scott Oster |
caBIG – overall architecture |
|
10 |
February 2 |
Steve Langella |
caBIG – security |
|
11 |
February 7 |
Metin Gurcan |
Computer-Aided Diagnosis - 1 |
|
12 |
February 9 |
Metin Gurcan |
Computer-Aided Diagnosis - 2 |
|
13 |
February 14 |
Students |
Paper presentation |
|
14 |
February 16 |
Students |
Paper presentation |
|
15 |
February 21 |
Joel Saltz |
Translational research |
|
16 |
February 23 |
Umit Catalyurek |
Microarray - Intro |
|
17 |
February 28 |
Umit Catalyurek |
R and Bioconductor |
|
18 |
March 2 |
Umit Catalyurek |
Biomedical Informatics and High Performance Computing |
|
19 |
March 7 |
Students |
Term Project Presentation |
|
20 |
March 9 |
Students |
Term Project Presentation |
|
|
March 14, 16 |
Exam Week |
No class |
Grading:
|
Class participation |
10% |
|
Homework(s) |
15% |
|
Paper presentation |
20% |
|
Progress Report |
10% |
|
Term Project Report |
30% |
|
Term Project Presentation |
15% |
Reports and homeworks are due at the beginning of class (9am) on the due date.